Publication Data for PMID: 24103508


Grefenstette JJ, Brown ST, Rosenfeld R, Depasse J, Stone NT, Cooley PC, Wheaton WD, Fyshe A, Galloway DD, Sriram A, Guclu H, Abraham T, Burke DS. FRED (A Framework for Reconstructing Epidemic Dynamics): An open-source software system for modeling infectious diseases and control strategies using census-based populations. BMC Public Health, 2013 Oct;13(1), 940. doi: 10.1186/1471-2458-13-940. PubMed PMID: 24103508.

Source code

This file contains:
  • the version of FRED used to generate the data for the paper
  • the synthetic population of Allegheny County, PA
Download: FRED-V2.2.1.tgz

Data and scripts to generate figures

This file contains:
  • data needed to create figures 5-8 in the paper.
  • shell scripts to create the figures from the data.
  • a shell script that runs FRED for each state to create the data used in figure 5.
  • a base parameter file used for the runs.
  • a shell script to collect the timing associated with each state.
  • a file README.txt with detailed instructions.
Download: figs.tar