FRED Publications
How to cite FRED
If you use FRED in your research, please use the following citation:
Grefenstette JJ, Brown ST, Rosenfeld R, Depasse J, Stone NT, Cooley PC, Wheaton WD, Fyshe A,
Galloway DD, Sriram A, Guclu H, Abraham T, Burke DS. FRED (A Framework for Reconstructing
Epidemic Dynamics): An open-source software system for modeling infectious diseases and
control strategies using census-based populations. BMC Public Health, 2013 Oct;13(1),
940. doi: 10.1186/1471-2458-13-940. PubMed PMID:
24103508.
Publication data.
Other publications using FRED
2019
Sinclair D, Grefenstette JJ, Krauland MG, Galloway DD, Frankeny RJ, Travis C, Burke DS, and Roberts, MS. Forecasted Size of Measles Outbreaks Associated With Vaccination Exemptions for Schoolchildren, JAMA Netw Open. 2019;2(8):e199768. doi:10.1001/jamanetworkopen.2019.9768. PubMed PMID:
31433482.
2016
Guclu H, Kumar S, Galloway D, Krauland M, Sood R, Bocour A, Hershey TB, van Nostrand E, Potter M. An Agent-Based Model for Addressing the Impact of a Disaster on Access to Primary Care Services,
Disaster Med Public Health Prep. 2016 Jun;10(3):386-93. doi: 10.1017/dmp.2016.44. Epub 2016 Apr 14. PubMed PMID:
27075561.
2015
Kumar S, Piper K, Galloway DD, Hadler JL, and Grefenstette JJ. Is population structure sufficient
to generate area-level inequalities in influenza rates? An examination using agent-based models
BMC Public Health, 2015 Sep 23;15(1):947. doi:10.1186/s12889-015-2284-2. PubMed PMID:
26400564.
Publication data.
Liu F, Enanoria WT, Zipprich J, Blumberg S, Harriman K, Ackley SF, Wheaton WD, Allpress JL,
Porco TC. The role of vaccination coverage, individual behaviors, and the public health response in
the control of measles epidemics: an agent-based simulation for California. BMC Public Health.
2015 May 1;15(1):447. [Epub ahead of print] PubMed PMID:
25928152.
2014
Lukens S, DePasse J, Rosenfeld R, Ghedin E, Mochan E, Brown ST, Grefenstette J, Burke DS, Swigon D,
Clermont G. A large-scale immuno-epidemiological simulation of influenza A epidemics. BMC Public
Health. 2014 Sep 29;14:1019. doi: 10.1186/1471-2458-14-1019. PubMed PMID:
25266818;
PubMed Central PMCID: PMC4194421.
2013
Kumar S, Grefenstette JJ, Galloway DD, Albert SM, and Burke DS. Policies to reduce influenza in the
workplace: Impact assessments using an agent-based model. Am J Public Health, 2013 Aug;103(8):1406-11.
doi: 10.2105/AJPH.2013.301269. Epub 2013 Jun 13. PubMed PMID:
23763426.
Publication data.
2012
Paparian J, Brown S, Burke D, Grefenstette J. "FRED Navigator: An interactive system for visualizing
results from large-scale epidemic simulations," 2012 IEEE 8th International Conference on e-Science
(e-Science 2012), pp.1-5, 8-12 Oct. 2012 doi: 10.1109/eScience.2012.6404444.
2011
Brown ST, Tai JH, Bailey RR, Cooley PC, Wheaton WD, Potter MA, Voorhees RE, Lejeune M, Grefenstette
JJ, Burke DS, McGlone SM, Lee BY. Would school closure for the 2009 H1N1 influenza epidemic have been
worth the cost?: A computational simulation of Pennsylvania. BMC Public Health. BMC Public Health.
2011 May 20;11:353. doi: 10.1186/1471-2458-11-353. PubMed PMID:
21599920;
PubMed Central PMCID: PMC3119163
Cooley P, Brown S, Cajka J, Chasteen B, Ganapathi L, Grefenstette J, Hollingsworth CR, Lee BY, Levine
B, Wheaton WD, Wagener DK. The role of subway travel in an influenza epidemic: A New York City
simulation. J Urban Health. 2011 Oct;88(5):982-95. PubMed PMID:
21826584;
PubMed Central PMCID: PMC3191213.
Lee BY, Brown ST, Bailey RR, Zimmerman RK, Potter MA, McGlone SM, Cooley PC, Grefenstette JJ, Zimmer
SM, Wheaton WD, Quinn SC, Voorhees RE, Burke DS. The benefits to all of ensuring equal and timely
access to influenza vaccines in poor communities. Health Aff (Millwood). 2011 Jun;30(6):1141-50.
PubMed PMID:
21653968;
PubMed Central PMCID: PMC3385997
2010
Lee BY, Brown ST, Cooley PC, Zimmerman RK, Wheaton WD, Zimmer SM, Grefenstette JJ, Assi TM, Furphy TJ,
Wagener DK, Burke DS. A computer simulation of employee vaccination to mitigate an influenza epidemic.
Am J Prev Med. 2010 Mar;38(3):247-57. Epub 2009 Dec 30. PubMed PMID:
20042311;
PubMed Central PMCID: PMC2833347.
Lee BY, Brown ST, Cooley P, Potter MA, Wheaton WD, Voorhees RE, Stebbins S, Grefenstette JJ, Zimmer
SM, Zimmerman RK, Assi TM, Bailey RR, Wagener DK, Burke DS. Simulating school closure strategies to
mitigate an influenza epidemic. J Public Health Manag Pract. 2010 May-Jun;16(3):252-61. PubMed PMID:
20035236;
PubMed Central PMCID: PMC2901099.
Lee BY, Brown ST, Korch G, Cooley PC, Zimmerman RK, Wheaton WD, Zimmer SM, Grefenstette JJ, Bailey
RR, Assi TM, Burke DS. A computer simulation of vaccine prioritization, allocation, and rationing
during the 2009 H1N1 influenza pandemic. Vaccine. 2010 Jul 12;28(31):4875-9. doi:
10.1016/j.vaccine.2010.05.002. Epub 2010 May 16. PubMed PMID:
20483192;
PubMed Central PMCID:PMC2906666
Lee BY, Brown ST, Cooley P, Grefenstette JJ, Zimmerman RK, Zimmer SM, Potter MA, Rosenfeld R, Wheaton
WD, Wiringa AE, Bacon KM, Burke DS. Vaccination deep into a pandemic wave potential mechanisms for
a "third wave" and the impact of vaccination. Am J Prev Med. 2010 Nov;39(5):e21-9. PubMed PMID:
20965375;
PubMed Central PMCID: PMC2975455.